SpecsModelExplore
Overview
Actors
External Systems
Clinical Data Product
Clinical Ingestion
Clinical Data
Analytics & Research
De-identification Pipeline
Analytics Warehouse
LoaderOMOP MapperQuery API
Clinical Apps
Governance & Audit
OMOP Mapper
Responsibilities
SpecsModelExplore
OMOP Mapper
OverviewGuideLinks and Communications

OMOP Mapper

The OMOP Mapper transforms canonical clinical concepts into OMOP CDM tables — PERSON, VISIT_OCCURRENCE, MEASUREMENT, etc.

Standard cohort vocabulary

Researchers write SQL against OMOP tables — the mapper is what makes hospital-specific codes comparable across sites.

Responsibilities

  • Vocabulary mapping for conditions, drugs and measurements.
  • Feeds the Loader.
  • Invoked on de-id pipeline output, not on live PHI.